A High-Resolution Hydrodynamic Model of Puget Sound to Support Nearshore Restoration Feasibility Analysis and Design

References

1. 1. Babson A.L.,
   2. Kawase M.,
   3. MacCready P.

   2006. Seasonal and interannual variability in the circulation of Puget Sound, Washington: A box model study. Atmosphere-Ocean 44:29–45.

   OpenUrl
2. 1. Barnes C.A.,
   2. Collias E.E.

   1958. Some consideration of oxygen utilization rates in Puget Sound. Journal of Marine Research 17:68–80.

   OpenUrlWeb of Science
3. 1. Barnes C.A.,
   2. Ebbesmeyer C.C.

   1978. Some aspects of Puget Sound’s circulation and water properties. Pages 209–228 in Kjerfve B. (ed), Estuarine Transport Processes. Columbia: University of South Carolina Press.
4. 1. Blumberg A.F.,
   2. Mellor G.L.

   1987. A Description of a three-dimensional coastal ocean circulation model. Pages 1–16 in Heaps N.S. (ed), Three-Dimensional Coastal Ocean Models. Washington DC: American Geophysical Union.
5. 1. Bortleson G.C.,
   2. Chrzastowski M.J.,
   3. Helgerson A.K.

   1980. Historical changes of shoreline and wetland at eleven major deltas in the Puget Sound region, Washington. Hydrologic Investigations Atlas HA-617. Washington DC: U.S. Geological Survey.
6. 1. Bretschneider D.E.,
   2. Cannon G.A.,
   3. Holbrook J.R.,
   4. Pashinski D.J.

   1985. Variability of subtidal current structure in a fjord estuary: Puget Sound, Washington. Journal of Geophysical Research 90:11,949–11,958.

   OpenUrl
7. 1. Cannon G.A.

   1983. An overview of circulation in the Puget Sound estuarine system. NOAA Technical Memorandum. ERL PMEL-48.
8. 1. Cannon G.A.,
   2. Holbrook J.R.,
   3. Pashinski D.J.

   1990. Variations in the onset of bottom water intrusions over the entrance sill of a fjord. Estuaries 13:31–42.

   OpenUrlCrossRefWeb of Science
9. 1. Cannon G.A.,
   2. Laird N.P.

   , 1978. Variability of currents and water properties from year-long observations in a fjord estuary. Pages 515–535 in Nichoul J.C.J. (ed), Hydrodynamics of Estuaries and Fjords. Amsterdam: Elsevier.
10. 1. Chapman R.S.,
    2. Johnson B.H.,
    3. Vemulakonda S.R.

    1996. User’s guide for the sigma stretched version of CH3DWES. Technical Report HL-96-21. U.S. Army Engineer Waterways Experiment Station.
11. 1. Chen C.,
    2. Liu H.,
    3. Beardsley R.C.

    2003. An unstructured, finite-volume, three-dimensional, primitive equation ocean model: Application to coastal ocean and estuaries. Journal of Atmospheric and Oceanic Technology 20:159–186.

    OpenUrlCrossRefWeb of Science
12. 1. Chen C.,
    2. Beardsley R.C.,
    3. Cowles G.

    2006. An unstructured grid, finite-volume coastal ocean model: FVCOM user manual. SMAST/UMASSD Technical Report-06-0602.
13. 1. Cokelet E.D.,
    2. Stewart R.J.,
    3. Ebbesmeyer C.C.

    1990. The annual mean transport in Puget Sound. NOAA Technical Memorandum ERL PMEL-92. Seattle: Pacific Marine Environmental Laboratory.
14. 1. Collias E.,
    2. McGary N.,
    3. Barnes C.A.

    1974. Atlas of physical and chemical properties of Puget Sound and its surrounding approaches. WSG-74-1. Seattle: Dept. of Oceanography, University of Washington.
15. 1. Collins B.D.,
    2. Sheikh A.J.

    2005. Historical reconstruction, classification and change analysis of Puget Sound tidal marshes. Puget Sound River History Project. Seattle: University of Washington.
16. 1. Collins M.B.,
    2. Ke X.,
    3. Gao S.

    1998. Tidally-induced flow structure over intertidal flats. Estuarine, Coastal, and Shelf Science 46:233–250.

    OpenUrlCrossRefWeb of Science
17. 1. Crawford W.R.,
    2. Cherniawsky J.Y.,
    3. Cummins P.F.

    1999. Surface currents in British Columbia waters: Comparison of observations and model predictions. Atmosphere-Ocean 37:255–280.

    OpenUrl
18. 1. Cummins P.F.,
    2. Masson D.,
    3. Foreman M.G.G.

    2000. Stratification and mean flow effects on diurnal tidal currents off Vancouver Island. Journal of Physical Oceanography 30:15–30.

    OpenUrlCrossRefWeb of Science
19. 1. Cummins P.F.,
    2. Oey L.Y.

    1997. Simulation of barotropic and baroclinic tides off northern British Columbia. Journal of Physical Oceanography 27:762–781.

    OpenUrlCrossRefWeb of Science
20. 1. Downing J

    . 1983. The Coast of Puget Sound—Its Processes and Development. Seattle: University of Washington.
21. 1. Ebbesmeyer C.C.,
    2. Barnes C.A.

    1980. Control of a fjord basin’s dynamics by tidal mixing in embracing sill zones. Estuarine and Coastal Marine Sciences 11:311–330.

    OpenUrlCrossRef
22. 1. Ebbesmeyer C.C.,
    2. Barnes C.A.,
    3. Cannon G.A.,
    4. Bretschneider D.E.

    1989. Linkage of ocean and fjord dynamics at decadal period. Pages 399–417 in Peterson D.H. (ed), Aspects of Climate Variability in the Pacific and Western Americas. Geophysical Monograph 55. Washington: American Geophysical Union.
23. 1. Ebbesmeyer C.C.,
    2. Cannon G.A.,
    3. Nairn B.J.,
    4. Kawase M.,
    5. Fox W.P.

    2001. Puget Sound physical oceanography related to the triple junction region. Interim report for King County Department of Natural Resources, Washington, September 4, 2001.
24. 1. Edwards K.A.,
    2. MacCready P.,
    3. Moum J.N.,
    4. Pawlak G.,
    5. Klymak J.,
    6. Perlin A.

    2004. Form drag and mixing due to tidal flow past a sharp point. Journal of Physical Oceanography 34:1297–1312.

    OpenUrlCrossRefWeb of Science
25. 1. Fagherazzi S.,
    2. Hannion M.,
    3. D’Odorico P.

    2008. Geomorphic structure of tidal hydrodynamics in salt marsh creeks. Water Resources Research 44:W02419, doi:10.1029/2007/WR006289.

    OpenUrlCrossRef
26. 1. Flater D.

    , 1996. A brief introduction to XTide. Linux Journal 32:51–57.

    OpenUrl
27. 1. Friebertshauser M.A.,
    2. Duxbury A.C.

    1972. A water budget study of Puget Sound and its subregions. Limnology and Oceanography 17:237–247.

    OpenUrlCrossRefWeb of Science
28. 1. Geyer W.R.,
    2. Cannon G.A.

    1982. Sill processes related to deep water renewal in a fjord. Journal of Geophysical Research 87:7985–7996.

    OpenUrlCrossRef
29. 1. Geyer W.R.,
    2. Trowbridge J.H.,
    3. Bowen M.M.

    2000. The dynamics of a partially mixed estuary. Journal of Physical Oceanography 30:2035–2048.

    OpenUrlCrossRefWeb of Science
30. 1. Gorman R.M.,
    2. Neilson C.G.

    1999. Modeling shallow water wave generation and transformation in an intertidal estuary. Coastal Engineering 36:197–217.

    OpenUrlCrossRefWeb of Science
31. 1. Greenberg D.A.,
    2. Shore J.A.,
    3. Page F.H.,
    4. Dowd M.

    2005. A finite element circulation model for embayments with drying intertidal areas and its application to the Quoddy Region of the Bay of Fundy. Ocean Modeling 10:211–231.

    OpenUrlCrossRef
32. 1. Grossman E.E.,
    2. Stevens A.,
    3. Gelfenbaum G.,
    4. Curran C.

    2007. Nearshore circulation and water column properties in the Skagit River Delta, northern Puget Sound, Washington: Juvenile chinook salmon habitat availability in the Swinomish Channel. U.S. Geological Survey Scientific Investigations Report 2007-5120. http://pubs.usgs.gov/sir/2007/5120/
33. 1. Haidvogel D.B.,
    2. Arango H.G.,
    3. Hedstrom K.,
    4. Beckmann A.,
    5. Malanotte-Rizzoli P.,
    6. Shchepetkin A.F.

    2000. Model evaluation experiments in the North Atlantic basin: Simulations in nonlinear terrain-following coordinates. Dynamics of Atmospheres and Oceans 32:239–281.

    OpenUrlCrossRefWeb of Science
34. 1. Hamilton P.,
    2. Gunn J.T.,
    3. Cannon G.A.

    1985. A box model of Puget Sound. Estuarine, Coastal, and Shelf Science 20:673–692.

    OpenUrlCrossRefWeb of Science
35. 1. Hamrick J.M.

    1992. A three-dimensional environmental fluid dynamics computer code: Theoretical and computational aspects. Special Report 317. Williamsburg: Virginia Institute of Marine Science, College of William and Mary.
36. 1. Holbrook J.R.,
    2. Muench R.D.,
    3. Kachel D.G.,
    4. Wright C.

    1980. Circulation in the Strait of Juan de Fuca: Recent oceanographic observations in the Eastern Basin. NOAA Technical Report, ERL-PMEL 33.
37. 1. Hood W.G.

    2004. Indirect environmental effects of dikes on estuarine tidal channels: Thinking outside of the dike for habitat restoration and monitoring. Estuaries 27:273–282.

    OpenUrlCrossRefWeb of Science
38. 1. Hood W.G.

    2007. Scaling tidal channel geometry with marsh island area: A tool for habitat restoration, linked to channel formation process. Water Resources Research 43:W03409, doi:10.1029/2006WR005083.

    OpenUrlCrossRef
39. 1. Lavelle J.W.,
    2. Cokelet E.D.,
    3. Cannon G.A.

    1991. A model study of density intrusions into and circulation within a deep, silled estuary: Puget Sound. Journal of Geophysical Research–Oceans 96:16779–16800.

    OpenUrlCrossRef
40. 1. Levings C.D.,
    2. McAllister C.D.,
    3. Macdonald J.S.,
    4. Brown T.J.,
    5. Kotyk M.S.,
    6. Kask B.A.

    1989. Chinook salmon (Oncorhynchus tshawytscha) and estuarine habitat: A transfer experiment can help evaluate estuary dependency. Canadian Special Publication of Fisheries and Aquatic Sciences 105:116–22.

    OpenUrl
41. 1. Li M.,
    2. Gargett A.,
    3. Denman K.

    1999. Seasonal and interannual variability of estuarine circulation in a box model of the Strait of Georgia and Juan de Fuca Strait. Atmosphere-Ocean 37:1–19.

    OpenUrl
42. 1. Magnusson A.,
    2. Hilborn R.

    2003. Estuarine influence on survival rates of coho (Oncorhynchus kisutch) and chinook salmon (Oncorhynchus tshawytscha) released from hatcheries on the U.S. Pacific Coast. Estuaries 26:1094–1103.

    OpenUrlCrossRefWeb of Science
43. 1. Nairn B.J.,
    2. Kawase M.

    , 2002. Comparison of observed circulation patterns and numerical model predictions in Puget Sound, WA. In Droscher T. (ed), Proceedings, 2001 Puget Sound Research Conference. Olympia WA: Puget Sound Water Quality Action Team.
44. 1. Phalen G

    . 2007. The coastal program in Puget Sound. Adapting to a changing landscape. National Wetlands Newsletter 29(6).
45. 1. Ralston D. K.,
    2. Stacey M.T.

    2005a. Longitudinal dispersion and lateral circulation in the intertidal zone. Journal of Geophysical Research 110, C07015, doi:10.1029/2005JC002888.

    OpenUrlCrossRef
46. 1. Ralston D.K.,
    2. Stacey M.T.

    2005b. Stratification and turbulence in subtidal channels through intertidal mudflats. Journal of Geophysical Research 110, doi:10.1029/2004JC002650.

    OpenUrlCrossRef
47. 1. Raposa K.B.,
    2. Roman C.T.

    2001. Seasonal habitat-use patterns of nekton in a tide-restricted and unrestricted New England salt marsh. Wetlands 21:451–461.

    OpenUrlCrossRef
48. 1. Reimers P.E.

    1971. The length of residence of juvenile fall chinook salmon in Sixes River, Oregon. PhD thesis, Oregon State University.
49. 1. Sheng Y.P.

    1989. Evolution of a 3-D Curvilinear-grid hydrodynamic model: CH3D. Pages 40–49 in Spaulding M.L. (ed), Estuarine and Coastal Modeling. Reston VA: American Society of Civil Engineers.
50. 1. Tanner C.D.,
    2. Cordell J.R.,
    3. Rubey J.,
    4. Tear L.M.

    2002. Restoration of freshwater intertidal habitat functions at Spencer Island, Everett, Washington. Restoration Ecology 10:564–576.

    OpenUrlCrossRefWeb of Science
51. U.S. Federal Register. 1999. Endangered and Threatened Wildlife and Plants; Listing of Nine Evolutionarily Significant Units of Chinook Salmon, Chum Salmon, Sockeye Salmon, and Steelhead. 64(147):41835–41839.
52. 1. Warren R.S.,
    2. Fell P.E.,
    3. Rozsa R.,
    4. Brawley A.H.,
    5. Orsted A.C.,
    6. Olson E.T.,
    7. Swamy V.,
    8. Niering W.A.

    2002. Salt marsh restoration in Connecticut: 20 years of science and management. Restoration Ecology 10:497–513.

    OpenUrlCrossRefWeb of Science
53. 1. Yang Z.,
    2. Khangaonkar T.

    2009. Modeling tidal circulation and stratification in Skagit River Estuary using an unstructured grid ocean model. Ocean Modelling 28:34–49.

    OpenUrlCrossRefWeb of Science